Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs7251595 | chr19:7014584 | T/C | 7.99E-5 | 492 | 37.77 | 33.8 | 8.53 | KM Plot |
| KIRC | rs7257342 | chr19:46356418 | C/T | 1.02E-7 | 507 | 38.1 | 28.1 | 1.77 | KM Plot |
| KIRC | rs7266119 | chr20:45100761 | C/T | 5.56E-5 | 505 | 38.37 | 35.43 | 4.75 | KM Plot |
| KIRC | rs72693110 | chr4:169159347 | A/G | 2.0E-8 | 509 | 37.18 | 39.67 | 3.1 | KM Plot |
| KIRC | rs72693111 | chr4:169159788 | G/T | 2.72E-8 | 502 | 37.4 | 39.23 | 3.1 | KM Plot |
| KIRC | rs72693112 | chr4:169160787 | G/A | 2.24E-8 | 507 | 37.33 | 39.23 | 3.1 | KM Plot |
| KIRC | rs72693116 | chr4:169162898 | G/T | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
| KIRC | rs72693117 | chr4:169163112 | A/C | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
| KIRC | rs72693118 | chr4:169163274 | T/A | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
| KIRC | rs72693119 | chr4:169163516 | C/T | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
| KIRC | rs72693120 | chr4:169163561 | G/A | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
| KIRC | rs72693122 | chr4:169164840 | G/C | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
| KIRC | rs72699106 | chr14:90574649 | G/A | 0.00012 | 498 | 34.85 | 50.17 | 16.95 | KM Plot |
| KIRC | rs72701372 | chr15:24348869 | C/G | 2.57E-8 | 499 | 37.42 | 32.7 | 3.3 | KM Plot |
| KIRC | rs72763811 | chr15:89134818 | A/G | 3.78E-5 | 499 | 37.4 | 47.27 | 4.63 | KM Plot |